Package lifesciences is an auto-generated package for the Cloud Life Sciences API.
Cloud Life Sciences is a suite of services and tools for managing, processing, and transforming life sciences data.
NOTE : This package is in beta . It is not stable , and may be subject to changes .
General documentation
For information about setting deadlines, reusing contexts, and more please visit https://pkg.go.dev/cloud.google.com/go .
Example usage
To get started with this package, create a client.
ctx := context . Background () // This snippet has been automatically generated and should be regarded as a code template only. // It will require modifications to work: // - It may require correct/in-range values for request initialization. // - It may require specifying regional endpoints when creating the service client as shown in: // https://pkg.go.dev/cloud.google.com/go#hdr-Client_Options c , err := lifesciences . NewWorkflowsServiceV2BetaClient ( ctx ) if err != nil { // TODO: Handle error. } defer c . Close ()
The client will use your default application credentials. Clients should be reused instead of created as needed. The methods of Client are safe for concurrent use by multiple goroutines. The returned client must be Closed when it is done being used.
Using the Client
The following is an example of making an API call with the newly created client.
ctx := context . Background () // This snippet has been automatically generated and should be regarded as a code template only. // It will require modifications to work: // - It may require correct/in-range values for request initialization. // - It may require specifying regional endpoints when creating the service client as shown in: // https://pkg.go.dev/cloud.google.com/go#hdr-Client_Options c , err := lifesciences . NewWorkflowsServiceV2BetaClient ( ctx ) if err != nil { // TODO: Handle error. } defer c . Close () req := & lifesciencespb . RunPipelineRequest { // TODO: Fill request struct fields. // See https://pkg.go.dev/cloud.google.com/go/lifesciences/apiv2beta/lifesciencespb#RunPipelineRequest. } op , err := c . RunPipeline ( ctx , req ) if err != nil { // TODO: Handle error. } resp , err := op . Wait ( ctx ) if err != nil { // TODO: Handle error. } // TODO: Use resp. _ = resp
Use of Context
The ctx passed to NewWorkflowsServiceV2BetaClient is used for authentication requests and for creating the underlying connection, but is not used for subsequent calls. Individual methods on the client use the ctx given to them.
To close the open connection, use the Close() method.
Functions
func DefaultAuthScopes
func
DefaultAuthScopes
()
[]
string
DefaultAuthScopes reports the default set of authentication scopes to use with this package.
LocationIterator
type
LocationIterator
struct
{
// Response is the raw response for the current page.
// It must be cast to the RPC response type.
// Calling Next() or InternalFetch() updates this value.
Response
interface
{}
// InternalFetch is for use by the Google Cloud Libraries only.
// It is not part of the stable interface of this package.
//
// InternalFetch returns results from a single call to the underlying RPC.
// The number of results is no greater than pageSize.
// If there are no more results, nextPageToken is empty and err is nil.
InternalFetch
func
(
pageSize
int
,
pageToken
string
)
(
results
[]
*
locationpb
.
Location
,
nextPageToken
string
,
err
error
)
// contains filtered or unexported fields
}
LocationIterator manages a stream of *locationpb.Location.
func (*LocationIterator) Next
func
(
it
*
LocationIterator
)
Next
()
(
*
locationpb
.
Location
,
error
)
Next returns the next result. Its second return value is iterator.Done if there are no more results. Once Next returns Done, all subsequent calls will return Done.
func (*LocationIterator) PageInfo
func
(
it
*
LocationIterator
)
PageInfo
()
*
iterator
.
PageInfo
PageInfo supports pagination. See the google.golang.org/api/iterator package for details.
OperationIterator
type
OperationIterator
struct
{
// Response is the raw response for the current page.
// It must be cast to the RPC response type.
// Calling Next() or InternalFetch() updates this value.
Response
interface
{}
// InternalFetch is for use by the Google Cloud Libraries only.
// It is not part of the stable interface of this package.
//
// InternalFetch returns results from a single call to the underlying RPC.
// The number of results is no greater than pageSize.
// If there are no more results, nextPageToken is empty and err is nil.
InternalFetch
func
(
pageSize
int
,
pageToken
string
)
(
results
[]
*
longrunningpb
.
Operation
,
nextPageToken
string
,
err
error
)
// contains filtered or unexported fields
}
OperationIterator manages a stream of *longrunningpb.Operation.
func (*OperationIterator) Next
func
(
it
*
OperationIterator
)
Next
()
(
*
longrunningpb
.
Operation
,
error
)
Next returns the next result. Its second return value is iterator.Done if there are no more results. Once Next returns Done, all subsequent calls will return Done.
func (*OperationIterator) PageInfo
func
(
it
*
OperationIterator
)
PageInfo
()
*
iterator
.
PageInfo
PageInfo supports pagination. See the google.golang.org/api/iterator package for details.
RunPipelineOperation
type
RunPipelineOperation
struct
{
// contains filtered or unexported fields
}
RunPipelineOperation manages a long-running operation from RunPipeline.
func (*RunPipelineOperation) Done
func
(
op
*
RunPipelineOperation
)
Done
()
bool
Done reports whether the long-running operation has completed.
func (*RunPipelineOperation) Metadata
func
(
op
*
RunPipelineOperation
)
Metadata
()
(
*
lifesciencespb
.
Metadata
,
error
)
Metadata returns metadata associated with the long-running operation. Metadata itself does not contact the server, but Poll does. To get the latest metadata, call this method after a successful call to Poll. If the metadata is not available, the returned metadata and error are both nil.
func (*RunPipelineOperation) Name
func
(
op
*
RunPipelineOperation
)
Name
()
string
Name returns the name of the long-running operation. The name is assigned by the server and is unique within the service from which the operation is created.
func (*RunPipelineOperation) Poll
func
(
op
*
RunPipelineOperation
)
Poll
(
ctx
context
.
Context
,
opts
...
gax
.
CallOption
)
(
*
lifesciencespb
.
RunPipelineResponse
,
error
)
Poll fetches the latest state of the long-running operation.
Poll also fetches the latest metadata, which can be retrieved by Metadata.
If Poll fails, the error is returned and op is unmodified. If Poll succeeds and the operation has completed with failure, the error is returned and op.Done will return true. If Poll succeeds and the operation has completed successfully, op.Done will return true, and the response of the operation is returned. If Poll succeeds and the operation has not completed, the returned response and error are both nil.
func (*RunPipelineOperation) Wait
func
(
op
*
RunPipelineOperation
)
Wait
(
ctx
context
.
Context
,
opts
...
gax
.
CallOption
)
(
*
lifesciencespb
.
RunPipelineResponse
,
error
)
Wait blocks until the long-running operation is completed, returning the response and any errors encountered.
See documentation of Poll for error-handling information.
WorkflowsServiceV2BetaCallOptions
type
WorkflowsServiceV2BetaCallOptions
struct
{
RunPipeline
[]
gax
.
CallOption
GetLocation
[]
gax
.
CallOption
ListLocations
[]
gax
.
CallOption
CancelOperation
[]
gax
.
CallOption
GetOperation
[]
gax
.
CallOption
ListOperations
[]
gax
.
CallOption
}
WorkflowsServiceV2BetaCallOptions contains the retry settings for each method of WorkflowsServiceV2BetaClient.
WorkflowsServiceV2BetaClient
type
WorkflowsServiceV2BetaClient
struct
{
// The call options for this service.
CallOptions
*
WorkflowsServiceV2BetaCallOptions
// LROClient is used internally to handle long-running operations.
// It is exposed so that its CallOptions can be modified if required.
// Users should not Close this client.
LROClient
*
lroauto
.
OperationsClient
// contains filtered or unexported fields
}
WorkflowsServiceV2BetaClient is a client for interacting with Cloud Life Sciences API. Methods, except Close, may be called concurrently. However, fields must not be modified concurrently with method calls.
A service for running workflows, such as pipelines consisting of Docker containers.
func NewWorkflowsServiceV2BetaClient
func
NewWorkflowsServiceV2BetaClient
(
ctx
context
.
Context
,
opts
...
option
.
ClientOption
)
(
*
WorkflowsServiceV2BetaClient
,
error
)
NewWorkflowsServiceV2BetaClient creates a new workflows service v2 beta client based on gRPC. The returned client must be Closed when it is done being used to clean up its underlying connections.
A service for running workflows, such as pipelines consisting of Docker containers.
Example
package
main
import
(
"context"
lifesciences
"cloud.google.com/go/lifesciences/apiv2beta"
)
func
main
()
{
ctx
:=
context
.
Background
()
// This snippet has been automatically generated and should be regarded as a code template only.
// It will require modifications to work:
// - It may require correct/in-range values for request initialization.
// - It may require specifying regional endpoints when creating the service client as shown in:
// https://pkg.go.dev/cloud.google.com/go#hdr-Client_Options
c
,
err
:=
lifesciences
.
NewWorkflowsServiceV2BetaClient
(
ctx
)
if
err
!=
nil
{
// TODO: Handle error.
}
defer
c
.
Close
()
// TODO: Use client.
_
=
c
}
func NewWorkflowsServiceV2BetaRESTClient
func
NewWorkflowsServiceV2BetaRESTClient
(
ctx
context
.
Context
,
opts
...
option
.
ClientOption
)
(
*
WorkflowsServiceV2BetaClient
,
error
)
NewWorkflowsServiceV2BetaRESTClient creates a new workflows service v2 beta rest client.
A service for running workflows, such as pipelines consisting of Docker containers.
Example
package
main
import
(
"context"
lifesciences
"cloud.google.com/go/lifesciences/apiv2beta"
)
func
main
()
{
ctx
:=
context
.
Background
()
// This snippet has been automatically generated and should be regarded as a code template only.
// It will require modifications to work:
// - It may require correct/in-range values for request initialization.
// - It may require specifying regional endpoints when creating the service client as shown in:
// https://pkg.go.dev/cloud.google.com/go#hdr-Client_Options
c
,
err
:=
lifesciences
.
NewWorkflowsServiceV2BetaRESTClient
(
ctx
)
if
err
!=
nil
{
// TODO: Handle error.
}
defer
c
.
Close
()
// TODO: Use client.
_
=
c
}
func (*WorkflowsServiceV2BetaClient) CancelOperation
func
(
c
*
WorkflowsServiceV2BetaClient
)
CancelOperation
(
ctx
context
.
Context
,
req
*
longrunningpb
.
CancelOperationRequest
,
opts
...
gax
.
CallOption
)
error
CancelOperation starts asynchronous cancellation on a long-running operation. The server makes a best effort to cancel the operation, but success is not guaranteed. Clients may use Operations.GetOperation or Operations.ListOperations to check whether the cancellation succeeded or the operation completed despite cancellation. Authorization requires the following Google IAM (at https://cloud.google.com/iam ) permission:
lifesciences.operations.cancel
Example
package
main
import
(
"context"
lifesciences
"cloud.google.com/go/lifesciences/apiv2beta"
longrunningpb
"cloud.google.com/go/longrunning/autogen/longrunningpb"
)
func
main
()
{
ctx
:=
context
.
Background
()
// This snippet has been automatically generated and should be regarded as a code template only.
// It will require modifications to work:
// - It may require correct/in-range values for request initialization.
// - It may require specifying regional endpoints when creating the service client as shown in:
// https://pkg.go.dev/cloud.google.com/go#hdr-Client_Options
c
,
err
:=
lifesciences
.
NewWorkflowsServiceV2BetaClient
(
ctx
)
if
err
!=
nil
{
// TODO: Handle error.
}
defer
c
.
Close
()
req
:=
& longrunningpb
.
CancelOperationRequest
{
// TODO: Fill request struct fields.
// See https://pkg.go.dev/cloud.google.com/go/longrunning/autogen/longrunningpb#CancelOperationRequest.
}
err
=
c
.
CancelOperation
(
ctx
,
req
)
if
err
!=
nil
{
// TODO: Handle error.
}
}
func (*WorkflowsServiceV2BetaClient) Close
func
(
c
*
WorkflowsServiceV2BetaClient
)
Close
()
error
Close closes the connection to the API service. The user should invoke this when the client is no longer required.
func (*WorkflowsServiceV2BetaClient) Connection (deprecated)
func
(
c
*
WorkflowsServiceV2BetaClient
)
Connection
()
*
grpc
.
ClientConn
Connection returns a connection to the API service.
Deprecated: Connections are now pooled so this method does not always return the same resource.
func (*WorkflowsServiceV2BetaClient) GetLocation
func
(
c
*
WorkflowsServiceV2BetaClient
)
GetLocation
(
ctx
context
.
Context
,
req
*
locationpb
.
GetLocationRequest
,
opts
...
gax
.
CallOption
)
(
*
locationpb
.
Location
,
error
)
GetLocation gets information about a location.
Example
package
main
import
(
"context"
lifesciences
"cloud.google.com/go/lifesciences/apiv2beta"
locationpb
"google.golang.org/genproto/googleapis/cloud/location"
)
func
main
()
{
ctx
:=
context
.
Background
()
// This snippet has been automatically generated and should be regarded as a code template only.
// It will require modifications to work:
// - It may require correct/in-range values for request initialization.
// - It may require specifying regional endpoints when creating the service client as shown in:
// https://pkg.go.dev/cloud.google.com/go#hdr-Client_Options
c
,
err
:=
lifesciences
.
NewWorkflowsServiceV2BetaClient
(
ctx
)
if
err
!=
nil
{
// TODO: Handle error.
}
defer
c
.
Close
()
req
:=
& locationpb
.
GetLocationRequest
{
// TODO: Fill request struct fields.
// See https://pkg.go.dev/google.golang.org/genproto/googleapis/cloud/location#GetLocationRequest.
}
resp
,
err
:=
c
.
GetLocation
(
ctx
,
req
)
if
err
!=
nil
{
// TODO: Handle error.
}
// TODO: Use resp.
_
=
resp
}
func (*WorkflowsServiceV2BetaClient) GetOperation
func
(
c
*
WorkflowsServiceV2BetaClient
)
GetOperation
(
ctx
context
.
Context
,
req
*
longrunningpb
.
GetOperationRequest
,
opts
...
gax
.
CallOption
)
(
*
longrunningpb
.
Operation
,
error
)
GetOperation gets the latest state of a long-running operation. Clients can use this method to poll the operation result at intervals as recommended by the API service. Authorization requires the following Google IAM (at https://cloud.google.com/iam ) permission:
lifesciences.operations.get
Example
package
main
import
(
"context"
lifesciences
"cloud.google.com/go/lifesciences/apiv2beta"
longrunningpb
"cloud.google.com/go/longrunning/autogen/longrunningpb"
)
func
main
()
{
ctx
:=
context
.
Background
()
// This snippet has been automatically generated and should be regarded as a code template only.
// It will require modifications to work:
// - It may require correct/in-range values for request initialization.
// - It may require specifying regional endpoints when creating the service client as shown in:
// https://pkg.go.dev/cloud.google.com/go#hdr-Client_Options
c
,
err
:=
lifesciences
.
NewWorkflowsServiceV2BetaClient
(
ctx
)
if
err
!=
nil
{
// TODO: Handle error.
}
defer
c
.
Close
()
req
:=
& longrunningpb
.
GetOperationRequest
{
// TODO: Fill request struct fields.
// See https://pkg.go.dev/cloud.google.com/go/longrunning/autogen/longrunningpb#GetOperationRequest.
}
resp
,
err
:=
c
.
GetOperation
(
ctx
,
req
)
if
err
!=
nil
{
// TODO: Handle error.
}
// TODO: Use resp.
_
=
resp
}
func (*WorkflowsServiceV2BetaClient) ListLocations
func
(
c
*
WorkflowsServiceV2BetaClient
)
ListLocations
(
ctx
context
.
Context
,
req
*
locationpb
.
ListLocationsRequest
,
opts
...
gax
.
CallOption
)
*
LocationIterator
ListLocations lists information about the supported locations for this service.
Example
package
main
import
(
"context"
lifesciences
"cloud.google.com/go/lifesciences/apiv2beta"
"google.golang.org/api/iterator"
locationpb
"google.golang.org/genproto/googleapis/cloud/location"
)
func
main
()
{
ctx
:=
context
.
Background
()
// This snippet has been automatically generated and should be regarded as a code template only.
// It will require modifications to work:
// - It may require correct/in-range values for request initialization.
// - It may require specifying regional endpoints when creating the service client as shown in:
// https://pkg.go.dev/cloud.google.com/go#hdr-Client_Options
c
,
err
:=
lifesciences
.
NewWorkflowsServiceV2BetaClient
(
ctx
)
if
err
!=
nil
{
// TODO: Handle error.
}
defer
c
.
Close
()
req
:=
& locationpb
.
ListLocationsRequest
{
// TODO: Fill request struct fields.
// See https://pkg.go.dev/google.golang.org/genproto/googleapis/cloud/location#ListLocationsRequest.
}
it
:=
c
.
ListLocations
(
ctx
,
req
)
for
{
resp
,
err
:=
it
.
Next
()
if
err
==
iterator
.
Done
{
break
}
if
err
!=
nil
{
// TODO: Handle error.
}
// TODO: Use resp.
_
=
resp
}
}
func (*WorkflowsServiceV2BetaClient) ListOperations
func
(
c
*
WorkflowsServiceV2BetaClient
)
ListOperations
(
ctx
context
.
Context
,
req
*
longrunningpb
.
ListOperationsRequest
,
opts
...
gax
.
CallOption
)
*
OperationIterator
ListOperations lists operations that match the specified filter in the request. Authorization requires the following Google IAM (at https://cloud.google.com/iam ) permission:
lifesciences.operations.list
Example
package
main
import
(
"context"
lifesciences
"cloud.google.com/go/lifesciences/apiv2beta"
longrunningpb
"cloud.google.com/go/longrunning/autogen/longrunningpb"
"google.golang.org/api/iterator"
)
func
main
()
{
ctx
:=
context
.
Background
()
// This snippet has been automatically generated and should be regarded as a code template only.
// It will require modifications to work:
// - It may require correct/in-range values for request initialization.
// - It may require specifying regional endpoints when creating the service client as shown in:
// https://pkg.go.dev/cloud.google.com/go#hdr-Client_Options
c
,
err
:=
lifesciences
.
NewWorkflowsServiceV2BetaClient
(
ctx
)
if
err
!=
nil
{
// TODO: Handle error.
}
defer
c
.
Close
()
req
:=
& longrunningpb
.
ListOperationsRequest
{
// TODO: Fill request struct fields.
// See https://pkg.go.dev/cloud.google.com/go/longrunning/autogen/longrunningpb#ListOperationsRequest.
}
it
:=
c
.
ListOperations
(
ctx
,
req
)
for
{
resp
,
err
:=
it
.
Next
()
if
err
==
iterator
.
Done
{
break
}
if
err
!=
nil
{
// TODO: Handle error.
}
// TODO: Use resp.
_
=
resp
}
}
func (*WorkflowsServiceV2BetaClient) RunPipeline
func
(
c
*
WorkflowsServiceV2BetaClient
)
RunPipeline
(
ctx
context
.
Context
,
req
*
lifesciencespb
.
RunPipelineRequest
,
opts
...
gax
.
CallOption
)
(
*
RunPipelineOperation
,
error
)
RunPipeline runs a pipeline. The returned Operation’s [metadata] [google.longrunning.Operation.metadata] field will contain a google.cloud.lifesciences.v2beta.Metadata object describing the status of the pipeline execution. The response field will contain a google.cloud.lifesciences.v2beta.RunPipelineResponse object if the pipeline completes successfully.
Note: Before you can use this method, the Life Sciences Service Agent must have access to your project. This is done automatically when the Cloud Life Sciences API is first enabled, but if you delete this permission you must disable and re-enable the API to grant the Life Sciences Service Agent the required permissions. Authorization requires the following Google IAM (at https://cloud.google.com/iam/ ) permission:
lifesciences.workflows.run
Example
package
main
import
(
"context"
lifesciences
"cloud.google.com/go/lifesciences/apiv2beta"
lifesciencespb
"cloud.google.com/go/lifesciences/apiv2beta/lifesciencespb"
)
func
main
()
{
ctx
:=
context
.
Background
()
// This snippet has been automatically generated and should be regarded as a code template only.
// It will require modifications to work:
// - It may require correct/in-range values for request initialization.
// - It may require specifying regional endpoints when creating the service client as shown in:
// https://pkg.go.dev/cloud.google.com/go#hdr-Client_Options
c
,
err
:=
lifesciences
.
NewWorkflowsServiceV2BetaClient
(
ctx
)
if
err
!=
nil
{
// TODO: Handle error.
}
defer
c
.
Close
()
req
:=
& lifesciencespb
.
RunPipelineRequest
{
// TODO: Fill request struct fields.
// See https://pkg.go.dev/cloud.google.com/go/lifesciences/apiv2beta/lifesciencespb#RunPipelineRequest.
}
op
,
err
:=
c
.
RunPipeline
(
ctx
,
req
)
if
err
!=
nil
{
// TODO: Handle error.
}
resp
,
err
:=
op
.
Wait
(
ctx
)
if
err
!=
nil
{
// TODO: Handle error.
}
// TODO: Use resp.
_
=
resp
}
func (*WorkflowsServiceV2BetaClient) RunPipelineOperation
func
(
c
*
WorkflowsServiceV2BetaClient
)
RunPipelineOperation
(
name
string
)
*
RunPipelineOperation
RunPipelineOperation returns a new RunPipelineOperation from a given name. The name must be that of a previously created RunPipelineOperation, possibly from a different process.
